Direct Detection of SAH to Measure NNMT Enzymatic Activity

The AptaFluor SAH Methyltransferase Assay utilizes a far-red, TR-FRET end-point readout for direct detection of SAH in a simple mix-and-read format. SAH produced by methyltransferases, such as the NNMT Enzyme (Nicotinamide N-Methyltransferase), drives the assembly of the split aptamer allowing for FRET between a Terbium chelate donor and a DyLight 650 acceptor. The assay provides an excellent tool to screen compound libraries for methyltransferase modulators.

The kit comes complete with the detection reagents required to measure activity. NNMT enzyme is not included in the inhibitor screening assay kit. Please contact us for questions related to acquiring the enzyme.

This assay is designed to be used with purified enzyme preparations. Transcreener assays are not validated with cell lysates, blood, serum, or other biological samples.

Application Note: Detection of NNMT Activity with the AptaFluor SAH Assay

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Applications

  • Measure Enzymatic Activity of NNMT
  • Screen Compound Libraries for NNMT Inhibitors
  • Quantify Inhibitor Potency
  • Inhibitor Selectivity Profiling

Features

  • Use SAM concentrations as low as 100 nM and as high as 5 µM
  • Direct detection of unlabeled SAH
  • Easy to use, homogenous, one-step format ideal for HTS
  • Robust Assay Z’ > 0.7 under initial velocity conditions
  • Far-red fluorescent readouts minimize compound interference
  • A safe, non-radioactive method

Easy-to-Use, Mix-and-Read, HTS-Ready Assay

Run your enzyme reaction, add AptaFluor reagents, and read your plates. The NNMT assay is compatible with 96, 384, and 1536-well formats.

Aptaflour SAH Methyltransferase Assay In Well Schematic

Robust Assay Yields Quality Data

Z’ measurements using optimized NNMT reaction conditions indicate a robust assay. Robust data like this is vital for sizeable high throughput screens that are difficult to complete due to massive sample quantity. Z’ shown here = 0.73

NNMT Assay Z' Prime

Detection of SAH Under NNMT Initial Velocity

The assay demonstrates linearity when raw data is converted to SAH using a standard curve.  Here, we use both 5 µM SAM and 5 mM Nicotinamide as substrates. The buffer includes 50 mM Tris (pH 8.6) and 1 mM DTT. The reaction occurred for 1 hour at 37ºC  prior to adding AptaFluor reagents.

Human NNMT Enzyme Titration

NNMT Assay Enzyme Titration

Linear Response

NNMT Assay Enzyme Titration Linear Response

Interrogate Novel NNMT Modulators in a High Throughput Format

AptaFluor Assays are designed for screening compound libraries in a high throughput format. Follow-up SAR can also be performed using the assay to determine inhibitor potency with ease. Assay conditions here included 1.3 nM NNMT enzyme, 50 mM TRIS (pH 8.6), 1 mM DTT, 5 μM SAM, and 5 mM nicotinamide. The SAH Detection Mix included 20 nM P1-Terbium Mix, 40 nM P2-Dylight 650 nM, and 1X SAH Detection Buffer. The enzyme reaction took place for 60 minutes at 37°C. The Detection Mix was added and incubated for 180 minutes at room temperature and read with a Pherastar Plus/FS plate reader.

Dose-Response BI 78

NNMT Dose Response Curve with BI 78

IC50 = 5.7 μM

NNMT Assay Services

Interested in moving your program forward but don’t want to bring an assay in-house? Our scientists can help! BellBrook scientists will use their extensive biochemistry and enzymology expertise to work with you and accelerate your NNMT program.

Lead Discovery Services Include:
  • Inhibitor Screening

    To identify or confirm activity with the target.

  • Inhibitor Potency Profiling

    Dose-response with target and/or related proteins. Fast IC50 results.

  • Mechanism of Action Studies

    Kinetic analysis to define the mode of inhibition.

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What’s Included In The AptaFluor Kit

ComponentNotes
SAMSAM supplied in the kit should be used for MT enzyme reactions and to create a SAM/SAH standard curve.
SAHSAH is used to create a SAM/SAH standard curve.
Enzyme Stop Reagent, 10XEnzyme Stop Reagent is diluted to 1X in SAH Detection Buffer and used to quench the activity of MT enzyme components.
SAH Detection Buffer, 10XThis buffer is used to prepare the SAH Detection Mix and the Enzyme Stop Mix.
P1-BiotinP1-Biotin is a 55-base RNA oligomer with a biotin molecule at the 5' end. It is incubated with TB-Streptavidin to produce P1-Terbium, the donor piece of the SAH aptamer.
P2-Dylight 650P2-Dylight 650 is an 18-base RNA oligomer with a Dylight 650 molecule at the 3' end. It is the acceptor piece of the SAH aptamer.
Tb-StreptavidinTb-Streptavidin is used to produce the Tb-labeled (donor) piece of the SAH aptamer.
Conjugation BufferThis buffer is used for the P1-Biotin/Tb-Streptavidin conjugation reaction.

Additional Materials You Will Need

ComponentNotes
NNMT EnzymeWe have successfully used recombinant human NNMT Enzyme Complex from ProspecBio #ENZ-418.
SubstrateNicotinamide, from Sigma Aldrich #72340. The enzyme reaction contained 5 mM in the 10 μL enzyme reaction.
Enzyme Buffer 50 mM Tris-HCl (pH 8.6) and 1 mM DTT). Enzyme buffer components may be optimized as required.
Assay PlatesAssay Plates Can Be Purchased Directly Through BellBrook Labs

TR-FRET - An entirely white plate with a non-binding surface is required. We suggest Corning 384-well plates Cat. #4513
Plate ReaderA multi-detection microplate reader configured to read TR-FRET is required for the assay.
Liquid Handling DevicesUse liquid handling devices that can accurately dispense sub-microliter volumes into 384-well plates.
Ultrapure WaterSome deionized water systems are contaminated with nucleases that can degrade both nucleotide substrates and products and RNA aptamers. Careful handling and use of ultrapure water eliminates this potential problem.

Interconnections Between the DNA Damage Response and Innate Immunity

There is extensive crosstalk between the DNA damage response (DDR) pathways and innate immune pathways. Both the individual pathways and the interconnections between them are a focus for exciting new small molecule drug therapeutics that target cancers and debilitating autoimmune disorders. The Transcreener HTS Assay platform accelerates these efforts by providing a robust and easy-to-use biochemical assay to measure activity of key enzymes in the innate immune and DDR pathway.

In this guide, we provide an overview of the DDR and innate immune pathway, and describe Transcreener Assays and Assay Systems for key therapeutic targets. The enzyme targets discussed include:

DDR

  • POLQ
  • WRN
  • PARP1
  • PARG
  • DNA PK

Innate Immunity

  • cGAS
  • TREX1
  • TBK1
  • IKKβ
  • IRAK4
  • ENPP1
  • CD38
  • OAS-1
  • RIG-I/MDA5
  • DDX3
  • CD39
  • CD73
DNA Damage Response and Innate Immunity Preview

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The Role of NNMT As a Therapeutic Target

Nicotinamide N-methyltransferase (NNMT) plays a role in the methylation of nicotinamide, a form of vitamin B3, to N-methyl-nicotinamide. It has gained attention as a potential target for therapy due to its involvement in various biological processes and its possible impact on diseases.

NNMT is involved in the metabolism of nicotinamide, which is a precursor for NAD+ (nicotinamide adenine dinucleotide). NAD+ is crucial for a variety of cellular processes, including energy metabolism and DNA damage repair. Changes in NNMT activity can influence NAD+ levels and thereby affect metabolic functions. For these reasons, NNMT has been implicated in metabolic disorders like obesity and type 2 diabetes. Its involvement in energy metabolism and adipocyte function suggests that altering NNMT activity could impact weight management and insulin sensitivity.

Increased NNMT expression is often observed in several cancers, such as breast cancer, liver cancer, and prostate cancer. It is thought to contribute to tumor progression by altering cellular metabolism and influencing the tumor microenvironment. Targeting NNMT could potentially slow down cancer progression or enhance the effectiveness of other treatments.

NNMT’s effect on inflammation may play a role in neurodegenerative diseases like Parkinson’s Disease and Alzheimer’s Disease. NNMT may also play a role in cardiovascular health by affecting lipid metabolism.

As a promising therapeutic target, NNMT has broad involvement in various disease processes and its impact on metabolism. Developing specific inhibitors could help regulate its activity and potentially reverse or mitigate the effects of diseases in which NNMT is implicated.

Resources

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“Some CROs reserve their best teams for high profile customers. If you’re not right there with them you get less experienced teams… BellBrook understands enzyme kinetics, so it made that part of the project so much easier. The larger CRO didn’t seem to have the expertise we needed in this area.”

“The ADP assay is a great choice for measuring activity for any ADP-generating enzyme in both real time and endpoint formats. The universal detection system has been very useful for more challenging targets.”

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“The assay itself has good reproducibility and provides a clear readout on our enzyme activity. The most important piece, however, is the level of attention to our project and rapid turnaround time. The staff at BellBrook knows what they are doing.”

“The Transcreener AMP/GMP Assay is extremely straightforward to use and is very sensitive. In a UV-based enzyme assay I needed 1 µM enzyme to see a decent signal; however using the Transcreener AMP assay I only need 10 nM. Also, BellBrook Labs have been very helpful with the assay development. Their representative has been very willing to quickly help me get my assay up and running.”

“Through the process of developing and validating an assay for HTS applications, I generated a very nice data package of robust high quality data.”