Direct Detection of ADP to Measure VPS4A Enzymatic Activity

Transcreener ADP² Assay directly measures the ADP produced by VPS4A (Vacuolar protein sorting-associated protein 4A). The ADP measurements allow researchers to effectively determine the activity of the VPS4A enzyme. The assay provides a powerful tool for screening compound libraries for VPS4A modulators to help find new therapies for disease.

The kit includes the detection reagents required to measure activity. VPS4A enzyme is not included in the inhibitor screening assay kit but can be purchased through BellBrook Labs.

Looking for a detailed protocol for performing the assay in your lab? Download the application note to get the assay up and running in your lab within hours.

VPS4A Assay Application Note Preview

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Applications

  • Measure Enzymatic Activity of VPS4A
  • Screen Compound Libraries for VPS4A Inhibitors
  • Quantify Inhibitor Potency
  • Inhibitor Selectivity Profiling

Features

  • Direct detection of unlabeled ADP
  • Easy to use, homogenous, one-step format
  • Robust Assay Z’ > 0.7 under initial velocity conditions
  • Far-red fluorescent readouts minimize compound interference
  • A safe, non-radioactive method
  • Available in FP, FI, or TR-FRET readouts

Easy-to-Use, Mix-and-Read, HTS-Ready Assay

Run your enzyme reaction, add Transcreener reagents, and read your plates. The VPS4A assay is compatible with 96, 384, and 1536-well formats.

Transcreener Mix and Read Assay

Robust Assay Yields Quality Data

Z’ measurements using optimized VPS4A reaction conditions indicate a robust assay. Robust data like this is vital for sizeable, high-throughput screens that are difficult to complete due to the massive sample quantity. Z’ shown here = 0.91.

VPS4A Assay Z Prime with Transcreener

Detection of ADP Under VPS4A Initial Velocity

The assay demonstrates linearity when raw data is converted to ADP using a standard curve.  Here, we use 2 µM ATP (sub-Km concentration) in a reaction buffer containing 50 mM HEPES (pH 7.5), 10 mM MgCl2, 50 mM KCl, 5 mM DTT, and 0.01% Triton at 37°C for two hours. Linearity is shown here under initial velocity conditions when raw data is converted to ADP formed.

Human VPS4A Enzyme Titration

VPS4A Enzyme Titration

Linear Response

VPS4A Enzyme Titration Linear Response

Interrogate Novel VPS4A Modulators in a High Throughput Format

Transcreener Assays are designed for screening compound libraries in a high throughput format. Screening of 1280 compounds from the Tocris 2.0 Library set against VPS4A at 175 nM. Follow-up SAR can also be performed using the assay to determine inhibitor potency with ease. Assay conditions here include 2 µM ATP  in a reaction buffer containing 50 mM HEPES (pH 7.5), 10 mM MgCl2, 50 mM KCl, 5 mM DTT, and 0.01% Triton at 37°C for 2 hours. 15 hits were uncovered, as well as 3 interfering compounds.

VPS4A Screening Validated for HTS

VPS4A HTS Screen with Transcreener

Perform Follow-Up Dose-Response Assays and SAR

Dose-response testing of selected hits from the pilot screen (BVT948 and Polygodial) and the control inhibitor (DBeQ) against VPS4A (175nM).

BVT948 Dose-Response

VPS4A Dose Response with BVT948

IC50 = 2.72 μM

Polygodial Dose-Response

VPS4A Dose Response with Polygodial

IC50 = 3.17 μM

DBeQ Dose-Response

VPS4A Dose Response with DBeQ

IC50 = 36.25 μM

VPS4A Assay Services

Interested in moving your program forward but don’t want to bring an assay in-house? Our scientists can help! BellBrook scientists will use their extensive biochemistry and enzymology expertise to work with you and accelerate your AAA ATPase program.

Lead Discovery Services Include:
  • Inhibitor Screening

    To identify or confirm activity with the target.

  • Inhibitor Potency Profiling

    Dose-response with target and/or related proteins. Fast IC50 results.

  • Residence Time Measurements

    Determination of koff using ‘jump dilution’ enzymatic assay method.

  • Mechanism of Action Studies

    Kinetic analysis to define the mode of inhibition.

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What’s Included In The Transcreener Kit

ComponentNotes
ADP² AntibodyAntibody specific to the nucleotide ADP.
ADP TracerWhen displaced, changes in fluorescence can be read in an FP, FI, or TR-FRET depending on the assay format.
Stop & Detect Buffer B, 10X for FP & FI, Stop & Detect Buffer C, 10X for TR-FRET200 mM HEPES (pH 7.5), 400 mM EDTA, and 0.2% Brij-35. Stops enzyme reactions requiring Mg²+.
ATP and ADPATP and ADP are used to create the ATP/ADP standard curve. ATP is used as a phosphate donor to start the reaction.

Additional Materials You Will Need

ComponentNotes
VPS4A EnzymeWe have successfully used recombinant human VPS4A (aa 111-437) expressed and purified from insect cells (BellBrook Labs).
Enzyme Buffer50 mM HEPES (pH 7.5), 10 mM MgCl2, 50 mM KCl, 5 mM DTT, and 0.01% Triton. Enzyme buffer components may be optimized as required.
Assay PlatesAssay Plates Can Be Purchased Directly From BellBrook Labs

FP - An entirely black plate with a non-binding surface is required. We suggest Corning 384-well plates Cat. #4514

FI - An entirely black plate with a non-binding surface is required. We suggest Corning 384-well plates Cat. #4514

TR-FRET - An entirely white plate with a non-binding surface is required. We suggest Corning 384-well plates Cat. #4513
Plate ReaderA multi-detection microplate reader configured to measure the output of the ADP tracer is required.
Liquid Handling DevicesUse liquid handling devices that can accurately dispense sub-microliter volumes into 384-well plates.
Ultrapure WaterSome deionized water systems are contaminated with nucleases that can degrade both nucleotide substrates and products, reducing assay performance. Careful handling and use of ultrapure water eliminates this potential problem.

The Role of VPS4A As a Therapeutic Target

VPS4A (Vacuolar Protein Sorting 4A) is a crucial protein that plays an essential role in the endosomal sorting complexes required for the transport (ESCRT) pathway. This pathway is vital for various cellular processes, including the sorting of membrane proteins, vesicle trafficking, and the formation of multivesicular bodies (MVBs). VPS4A belongs to the AAA ATPase family and is key to disassembling the ESCRT-III complex, which is critical for the final stages of endosomal sorting, as well as for processes such as cytokinesis, viral budding, and autophagy.

Given VPS4A’s involvement in these biological functions, it presents a promising therapeutic target for a range of diseases, including cancer, viral infections, and neurodegenerative disorders. Ongoing research into the inhibition or modulation of VPS4A may lead to novel therapeutic approaches that could improve existing treatments or create new methods to tackle difficult diseases.

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“Some CROs reserve their best teams for high profile customers. If you’re not right there with them you get less experienced teams… BellBrook understands enzyme kinetics, so it made that part of the project so much easier. The larger CRO didn’t seem to have the expertise we needed in this area.”

“The ADP assay is a great choice for measuring activity for any ADP-generating enzyme in both real time and endpoint formats. The universal detection system has been very useful for more challenging targets.”

“Excellent blend of simplicity & good science. Excellent technical support”

“The assay itself has good reproducibility and provides a clear readout on our enzyme activity. The most important piece, however, is the level of attention to our project and rapid turnaround time. The staff at BellBrook knows what they are doing.”

“The Transcreener AMP/GMP Assay is extremely straightforward to use and is very sensitive. In a UV-based enzyme assay I needed 1 µM enzyme to see a decent signal; however using the Transcreener AMP assay I only need 10 nM. Also, BellBrook Labs have been very helpful with the assay development. Their representative has been very willing to quickly help me get my assay up and running.”

“Through the process of developing and validating an assay for HTS applications, I generated a very nice data package of robust high quality data.”